SELECT 
  cscart_ult_product_prices.product_id, 
  MIN(
    IF(
      cscart_ult_product_prices.percentage_discount = 0, 
      cscart_ult_product_prices.price, 
      cscart_ult_product_prices.price - (
        cscart_ult_product_prices.price * cscart_ult_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_ult_product_prices 
WHERE 
  cscart_ult_product_prices.product_id IN (
    145, 117, 219, 222, 220, 221, 113, 157, 
    68, 29, 6, 8, 14, 9, 10, 19, 21, 50, 51, 
    49, 48, 54, 153, 164, 248, 65, 64, 63, 
    62, 66, 140, 141
  ) 
  AND cscart_ult_product_prices.lower_limit = 1 
  AND cscart_ult_product_prices.company_id = 1 
  AND cscart_ult_product_prices.usergroup_id IN (0, 0, 1) 
GROUP BY 
  cscart_ult_product_prices.product_id

Query time 0.00058

JSON explain

{
  "query_block": {
    "select_id": 1,
    "filesort": {
      "sort_key": "cscart_ult_product_prices.product_id",
      "temporary_table": {
        "nested_loop": [
          {
            "table": {
              "table_name": "cscart_ult_product_prices",
              "access_type": "ALL",
              "possible_keys": [
                "usergroup",
                "product_id",
                "company_id",
                "lower_limit",
                "usergroup_id"
              ],
              "rows": 4,
              "filtered": 100,
              "attached_condition": "cscart_ult_product_prices.lower_limit = 1 and cscart_ult_product_prices.company_id = 1 and cscart_ult_product_prices.product_id in (145,117,219,222,220,221,113,157,68,29,6,8,14,9,10,19,21,50,51,49,48,54,153,164,248,65,64,63,62,66,140,141) and cscart_ult_product_prices.usergroup_id in (0,0,1)"
            }
          }
        ]
      }
    }
  }
}